PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G06013
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YB
Protein Properties Length: 195aa    MW: 20741.1 Da    PI: 5.1103
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G06013genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.81.3e-5727122297
        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  reqdr+lPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+++re+egek
  Ro03_G06013  27 REQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFREMEGEK 122
                  89********************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MADSDNDSGG AHNSPGGGYA KSELSPREQD RLLPIANVSR IMKKALPANA KISKDAKETV  60
QECVSEFISF ITGEASDKCQ REKRKTINGD DLLWAMTTLG FEEYVEPLKV YLQRFREMEG  120
EKSSMAARDK DATGVGFEGA ASGGGGGGAG VYWQQPQQVY GGGGFHQMGV SGVGLGKGGP  180
GSNMAKDDNL MDHKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-73NF-YB family protein