PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06525

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 366aa MW: 40988.9 Da PI: 9.6716

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06525	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.8e-10	13	64	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 r+ + +E++RR++++ +++L +llP++ +s+ s + +Av+YIk+Lq Ro03_G06525 13 RADRKTIEKNRRNQMKALYSKLNSLLPHQ---RSREvTSLPDQIDEAVNYIKKLQ 64 677789********************9...88998***************9 PP
2	HLH	31.6	3e-10	193	240	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + E++RR++++ ++eL++l P++ +s+ s + L +Av+YIk+Lq Ro03_G06525 193 KTTEKNRREQMKALLAELKSLQPHQ---SSREvASLPDQLDRAVNYIKKLQ 240 568*******************9...78888***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MDQQRYPSSS SSRADRKTIE KNRRNQMKAL YSKLNSLLPH QRSREVTSLP DQIDEAVNYI 60 KKLQTNLEKM RDKKDRLMGV EKITHNNNGC FGGGVLNLGA LRSPQIEIRE MGSVVEVVLI 120 TGLDCQFMFD ESIRVLLEEG ADIVNASFTV VGDTIFHTIH SKIGESAPGP VAARISERLG 180 KFQDLSSSKI DRKTTEKNRR EQMKALLAEL KSLQPHQSSR EVASLPDQLD RAVNYIKKLQ 240 INLEKMREKK DSLMRVAKIT NSNNAGFVGG QTVGGLKSPQ IKICETGSAL EVVLITGLDC 300 QFMFYESIRV LHEEGADIVN ASFSVVKDTI FHTIHSKIDE SSPRAVVARI SERLRKFVNE 360 ASNIAF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MDQQRYPSSS SSRADRKTIE KNRRNQMKAL YSKLNSLLPH QRSREVTSLP DQIDEAVNYI  60
KKLQTNLEKM RDKKDRLMGV EKITHNNNGC FGGGVLNLGA LRSPQIEIRE MGSVVEVVLI  120
TGLDCQFMFD ESIRVLLEEG ADIVNASFTV VGDTIFHTIH SKIGESAPGP VAARISERLG  180
KFQDLSSSKI DRKTTEKNRR EQMKALLAEL KSLQPHQSSR EVASLPDQLD RAVNYIKKLQ  240
INLEKMREKK DSLMRVAKIT NSNNAGFVGG QTVGGLKSPQ IKICETGSAL EVVLITGLDC  300
QFMFYESIRV LHEEGADIVN ASFSVVKDTI FHTIHSKIDE SSPRAVVARI SERLRKFVNE  360
ASNIAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	202	EKNRREQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	6e-47	bHLH family protein