PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06538

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Dof

Protein Properties

Length: 275aa MW: 29675.6 Da PI: 8.9603

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06538	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.2e-38	22	82	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprCds ntkfCyynnyslsqPryfCkaCrryWt+GG+lrnvPvGgg+rk k+++ Ro03_G06538 22 HHEPQKCPRCDSLNTKFCYYNNYSLSQPRYFCKACRRYWTQGGTLRNVPVGGGCRKGKRAK 82 67889***************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence
MQEEGDQQQS QDRKQVNPQQ QHHEPQKCPR CDSLNTKFCY YNNYSLSQPR YFCKACRRYW 60 TQGGTLRNVP VGGGCRKGKR AKTMSSASSS ANSSRSVAQP QDHQRSVMMS TGPAALSSLA 120 GSQYYPGGTG YLTSLPFTQS LNHLGGSDHL GSGTSSNLSL LQGFNAISSF GQQRQMQAQF 180 YQMGNKNMEP PPPPLYPSED HQGQLMQSTR PTGSMTDWPD SFINKSHASA AAASAGQSAM 240 WSTTMGNNTS TTSGAGPSAQ WPDDLAGSYA AGPPH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	9e-35	Dof family protein