PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06539

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Dof

Protein Properties

Length: 381aa MW: 41838.6 Da PI: 10.0176

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06539	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	56	116	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Ro03_G06539 56 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 116 7899******************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MLMDQQKMVL ISSTTNDWPQ IDDDDDQNHK GVMGSTAAVG ASRLMEKPGQ EQLQQQQQAL 60 KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRVKRPSS 120 TSAVENGASS SASSAPNSGN SNPNTNTQQQ NHHQIDLASN SNHHMNPLFY GLGSNPSDHM 180 GLNQFTASGF DQFSALGLGF GDQRFNPAAT SKQIQDLVAA NSLHSSNHSI FNSTSYSTAP 240 TMASVLASKF INGGFKDVRG NNNQYFQSLL PFEDLQIAAA GSEAVKGVKV EDGRQNRVEW 300 STNHQTNTEQ MGLSSDPTLY WSSSNLGANN WHDPASLGSL KSFWFLILRF LGLLVGVLFQ 360 RKKKNKKKKL KKGISRVGGS E

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MLMDQQKMVL ISSTTNDWPQ IDDDDDQNHK GVMGSTAAVG ASRLMEKPGQ EQLQQQQQAL  60
KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRVKRPSS  120
TSAVENGASS SASSAPNSGN SNPNTNTQQQ NHHQIDLASN SNHHMNPLFY GLGSNPSDHM  180
GLNQFTASGF DQFSALGLGF GDQRFNPAAT SKQIQDLVAA NSLHSSNHSI FNSTSYSTAP  240
TMASVLASKF INGGFKDVRG NNNQYFQSLL PFEDLQIAAA GSEAVKGVKV EDGRQNRVEW  300
STNHQTNTEQ MGLSSDPTLY WSSSNLGANN WHDPASLGSL KSFWFLILRF LGLLVGVLFQ  360
RKKKNKKKKL KKGISRVGGS E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	360	367	QRKKKNKK
2	361	372	RKKKNKKKKLKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	8e-40	Dof family protein