PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G06548
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 207aa    MW: 22951.1 Da    PI: 9.1733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G06548genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-201162156
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 ++y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Ro03_G06548 11 PHYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGN 62
                 68********.**********883....5*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MAASSSSTGQ PHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TFDTPEEAAL AYDGAARSLR  60
GNKAKTNFPA PLTRADLSLD LNVSSAHWAS HSGRLVEFLH TGVLNDVVKN EEAVATTSFV  120
VSRGPRPPVV GSSLVQEGSS TASYLGFVRR GLPIDLNEPP PLWLTASFRF SAQFFFYVFL  180
LPCVFGCLKM EKLRSEDICN VEEKMDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-47ERF family protein