PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G06550
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 254aa    MW: 27446.6 Da    PI: 9.9458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G06550genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.2e-202676256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++ a+++++g+
  Ro03_G06550 26 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDTAAREFRGA 76
                 69*******.**********8...557*************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MAPRTEKTAT AAAVAVKANG NVKEVHFRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAARAYDTAA REFRGAKAKT NFPLPSENVS LNIFKKNLAS NNSGGNSNNH SPSQSSTVES  120
SSREPALMVE SSPLDLNLVH GVSSGFGAPM RFPFQHQIPA IGAVIGVPTS PANHVLYFDS  180
VFRAGMVKNH QQYHQQLRFD RNLLHRDFLS GGGFTGGSQS DSDSSTVVDL NQHDLPRGGG  240
IDLDLNLPPP AELA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-29ERF family protein