PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G06934

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

LBD

Protein Properties

Length: 186aa MW: 20795.6 Da PI: 7.9669

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G06934	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.1	1e-45	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la ++ Ro03_G06934 14 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAIAQ 111 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Ro03_G06934 112 AE 113 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MKEISGRKQG GMSPCAACKL LRRRCAQDCV FAPYFPADEP HKFASVHKVF GASNVNKMLQ 60 ELPEHQRSDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DVLQTQLAIA QAEVVHLKMG 120 QFPSTSSPAT TPETTSPISV KHTMPNNNNN SQQQLQHRHH YHPHHQTTKS FFTMDMVEDL 180 ILLENL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-67	LBD family protein