PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G07444

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARF

Protein Properties

Length: 725aa MW: 80212.9 Da PI: 8.5783

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G07444	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.5	1.3e-23	119	220	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++ Ro03_G07444 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAENGD 212 89**************************996555555..8********************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Ro03_G07444 213 LCVGIRRA 220 9**997 PP
2	Auxin_resp	115.1	6.3e-38	286	369	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+t+++FevvY+Prast+eF vk++ v++al+v+++ GmRfkmafetedss++++ +Gt+++v+ dp+rWpnS+Wr+L+ Ro03_G07444 286 ASTLAATGQPFEVVYYPRASTPEFFVKASAVRAALRVQWCSGMRFKMAFETEDSSRISWfMGTIASVQVNDPIRWPNSPWRLLQ 369 567899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 725 aa Download sequence
MKETQIIIMK RSEKSLDPQL WHACAGGMVQ MPPVNSKVFY FPQGHAEHAQ AHVDFSAPVR 60 IPALILCRVA GIKYMADPET DEVFAKIRLV PSESNELFAP DDGSVDSDGS ENPEKPSSFA 120 KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTVI AKDVHGEVWK FRHIYRGTPR 180 RHLLTTGWST FVNQKKLVAG DSIVFLRAEN GDLCVGIRRA KRGLQEGSSE SASGWNHGGS 240 APSVLPYSGF SVFLKEEDNK MGRNACPNGN LRGGGGRVRP ESVAEASTLA ATGQPFEVVY 300 YPRASTPEFF VKASAVRAAL RVQWCSGMRF KMAFETEDSS RISWFMGTIA SVQVNDPIRW 360 PNSPWRLLQV TWDEPDLLQN VKCVSPWLIE LVSNFPIIHM APFSPPRKKL RLPQHPDFTL 420 DGQLTLPSFS GNPLGSSSPM CCLPDNTPAG IQGARHAQFR ISLSNLHFNN KLQSGLFSSS 480 FQRFDQNSRI HNGIRNGHTN SNESLSCLLT MGSSNQNLEK SDNVKKHQFL LFGQPILTEQ 540 QLSRSCSSAA VSQVLAGKNL KDENQGRKRF LSVGSDSALK RWVSLENSSL NKEIQFMDVD 600 TGHCKVFMES EDVGRTLDLS VLGSYEELYR RLAIMFGLEK PEMLSHVLYC DATGAVKQTG 660 DEPFSDFKRT TKRLTILTRP ANENIGRTWI RGMENAENGL GASNKTGPLS QTRSNLGILG 720 YIKVS

Sequence ? help Back to Top

Protein Sequence Length: 725 aa Download sequence

MKETQIIIMK RSEKSLDPQL WHACAGGMVQ MPPVNSKVFY FPQGHAEHAQ AHVDFSAPVR  60
IPALILCRVA GIKYMADPET DEVFAKIRLV PSESNELFAP DDGSVDSDGS ENPEKPSSFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY SADPPVQTVI AKDVHGEVWK FRHIYRGTPR  180
RHLLTTGWST FVNQKKLVAG DSIVFLRAEN GDLCVGIRRA KRGLQEGSSE SASGWNHGGS  240
APSVLPYSGF SVFLKEEDNK MGRNACPNGN LRGGGGRVRP ESVAEASTLA ATGQPFEVVY  300
YPRASTPEFF VKASAVRAAL RVQWCSGMRF KMAFETEDSS RISWFMGTIA SVQVNDPIRW  360
PNSPWRLLQV TWDEPDLLQN VKCVSPWLIE LVSNFPIIHM APFSPPRKKL RLPQHPDFTL  420
DGQLTLPSFS GNPLGSSSPM CCLPDNTPAG IQGARHAQFR ISLSNLHFNN KLQSGLFSSS  480
FQRFDQNSRI HNGIRNGHTN SNESLSCLLT MGSSNQNLEK SDNVKKHQFL LFGQPILTEQ  540
QLSRSCSSAA VSQVLAGKNL KDENQGRKRF LSVGSDSALK RWVSLENSSL NKEIQFMDVD  600
TGHCKVFMES EDVGRTLDLS VLGSYEELYR RLAIMFGLEK PEMLSHVLYC DATGAVKQTG  660
DEPFSDFKRT TKRLTILTRP ANENIGRTWI RGMENAENGL GASNKTGPLS QTRSNLGILG  720
YIKVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein