PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G07486
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YC
Protein Properties Length: 185aa    MW: 20977.9 Da    PI: 10.6031
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G07486genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.61.6e-1475167799
        NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  e+++e+++d+k  ++P+ rik+i++a++   +is++a  l+ ka e f+ +++  +   + + +++++    ++++v + + +dfl d vp+ 
  Ro03_G07486  75 EEEVEEKEDVKSYTFPMERIKRIIRAEDSDLRISSDAIFLVNKATEKFLEKFSEDAHKCCVKDRKKAIAYKHLSSVVCKQKRYDFLSDFVPER 167
                  5789**********************999999**********************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MATPKKAIPP KKTKETKKPS SKKKDNNNNN KKTSNGSVAA VRSPSAKSQK NREQNGDKST  60
KTPTPKSNKG KRVREEEVEE KEDVKSYTFP MERIKRIIRA EDSDLRISSD AIFLVNKATE  120
KFLEKFSEDA HKCCVKDRKK AIAYKHLSSV VCKQKRYDFL SDFVPERVKA EDALAKRKQS  180
EAGTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.19e-34NF-YC family protein