PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G08079

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 352aa MW: 37714.2 Da PI: 8.153

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G08079	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.8e-18	40	87	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl Ro03_G08079 40 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 87 89****************************99**********97 PP
2	Myb_DNA-binding	46.8	6.8e-15	98	138	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Ro03_G08079 98 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 138 89*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MRNPSSASAS KGKSSAAAAA AVVSSSSSKT PCCIKVGLKR GPWTPEEDEL LANYIKKEGE 60 GRWRTLPKRA GLLRCGKSCR LRWMNYLRPS VKRGQIAPDE EDLILRLHRL LGNRWSLIAG 120 RIPGRTDNEI KNYWNTHLSK KLISQGIDPR THKPLNPDSS SGDHAAVNGA SSSKTNHHRV 180 MSSNPNPKSP ITSSSLVSTE EAAAPNAREN NGYLDQGNAN DDLGVIVHGA GGYGNGMTSN 240 DSDGSAPAMG ALRSNLLLGN EEDEDINCCT DDVFSSFLNS LINEDPFAAA AAAAGQHQLQ 300 PLQLVQQPNG IAPPTDLSAP AFGGWESAVL MSSAFIQNDP HRGIMLFTHN MK

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MRNPSSASAS KGKSSAAAAA AVVSSSSSKT PCCIKVGLKR GPWTPEEDEL LANYIKKEGE  60
GRWRTLPKRA GLLRCGKSCR LRWMNYLRPS VKRGQIAPDE EDLILRLHRL LGNRWSLIAG  120
RIPGRTDNEI KNYWNTHLSK KLISQGIDPR THKPLNPDSS SGDHAAVNGA SSSKTNHHRV  180
MSSNPNPKSP ITSSSLVSTE EAAAPNAREN NGYLDQGNAN DDLGVIVHGA GGYGNGMTSN  240
DSDGSAPAMG ALRSNLLLGN EEDEDINCCT DDVFSSFLNS LINEDPFAAA AAAAGQHQLQ  300
PLQLVQQPNG IAPPTDLSAP AFGGWESAVL MSSAFIQNDP HRGIMLFTHN MK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-85	MYB family protein