PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G08144

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GATA

Protein Properties

Length: 231aa MW: 25179.7 Da PI: 8.99

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G08144	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.4	3.1e-16	184	218	2	34
GATA 2 s..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 + nC +++Tp+WRrgp g+ktLCnaCG++yrk + Ro03_G08144 184 TnfNCCVKETPMWRRGPLGSKTLCNACGIKYRKLK 218 5559****************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence
ALHINSTSNS ISCFPSPSCS ALSPQTFLAS SAFSLPKLFK SSPFCVHLAK DIKEIQNILL 60 QKMDSLDLTL RLGMSSNEDE QPQLPPIFNA NGASNMTQGA FGSGVSGNVH AGQYSGISIT 120 EFQRSVSLAH TYRREHVLPP PTEMKEYCVI NISNRLAKVG GSRRRKATLS QRPVPEADEN 180 RSCTNFNCCV KETPMWRRGP LGSKTLCNAC GIKYRKLKLK EEQGEGAAEG A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20750.1	5e-14	GATA family protein