PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G10006
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family FAR1
Protein Properties Length: 148aa    MW: 16979.8 Da    PI: 4.7066
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G10006genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.85.6e-1679146271
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                  fYn+YA++ GFs+rksk +k   ng  ++r  vCs egkre++k++    + +raetr +C+a++k++ +
  Ro03_G10006  79 FYNRYAYSFGFSTRKSKAHKG-VNGILKDRVIVCSAEGKREKDKRN-PFVKCHRAETRFECQARMKISYQ 146
                  9***************99987.9999*****************999.88999***************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    
MEQDVEVTNN YGDETQSKLV IESDIDLNGS LEVEDNEVGD TEEATKPNEN VDSIHSRMQQ  60
ELIPVIGIEF DIEDDAHIFY NRYAYSFGFS TRKSKAHKGV NGILKDRVIV CSAEGKREKD  120
KRNPFVKCHR AETRFECQAR MKISYQLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.28e-12FAR1 family protein