PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10070

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 634aa MW: 73224 Da PI: 5.8455

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10070	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.1	7.3e-12	11	54	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 W Ede+l+ av ++G ++W++I+ ++ ++++ qck rw+ +l Ro03_G10070 11 WLNTEDEILKAAVMKYGLNQWDRISTLLN-RKSDDQCKARWFEWL 54 8889***********************.*********9986 PP
2	Myb_DNA-binding	29.6	1.6e-09	61	104	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k+++ W+tIa +g Rt+ qc r+ k+l Ro03_G10070 61 TEWTREEDEKLLHLAKLMPAQ-WRTIAPVVG--RTPSQCLGRYEKLL 104 68***************99.****8..****99999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence
MSNKTIRGGL WLNTEDEILK AAVMKYGLNQ WDRISTLLNR KSDDQCKARW FEWLDPSIKK 60 TEWTREEDEK LLHLAKLMPA QWRTIAPVVG RTPSQCLGRY EKLLDAACTD NHEFYEDPRR 120 LRPGEIDPNP ETRPARPDPV DMDEDEKEML SEARARLANT KGKKAKRKAR EAQLEEARRI 180 ASLQKRRELK AAGIYDESNR SQKRKRQGVI DYNAEIPFEK KPPLGFYDVS DEDREVGLEE 240 HDQFPRTIEE IEGKRRVDVE AELRKKDIAK NKITEKMHID VVAEPVRKRS KLMLPAPQIS 300 DNELEEIANM GYAGDLVVSE NKFTAANCSG VTPATPRFDL TPSKGSVIRD ELHLNKDIDK 360 HDRAKLEQLK QAEQLRNNVQ MGLTNLPQPK NEYQIFMQPV PEDNEEAGQQ ALLGKKRSEV 420 LDMSKNGDKR CSFPPNSIEQ ADEMVRKEIL SLQQHDNADN PINEKVVSAF EEDELKEAVF 480 MIAEEARYVG EAHKSCLSCL SSIAEDKENH VAGLQNEFEK VQNELEKVKK KAERIENRAK 540 VRTHGYEKRA KDVLWPKIEE TFKQMDMAEK ELECFQALQK QEKLAATRQI NNLWEDVLKQ 600 KELEQTLQKR YGDLLVELEK VQNQFKGAAP IMIF

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence

MSNKTIRGGL WLNTEDEILK AAVMKYGLNQ WDRISTLLNR KSDDQCKARW FEWLDPSIKK  60
TEWTREEDEK LLHLAKLMPA QWRTIAPVVG RTPSQCLGRY EKLLDAACTD NHEFYEDPRR  120
LRPGEIDPNP ETRPARPDPV DMDEDEKEML SEARARLANT KGKKAKRKAR EAQLEEARRI  180
ASLQKRRELK AAGIYDESNR SQKRKRQGVI DYNAEIPFEK KPPLGFYDVS DEDREVGLEE  240
HDQFPRTIEE IEGKRRVDVE AELRKKDIAK NKITEKMHID VVAEPVRKRS KLMLPAPQIS  300
DNELEEIANM GYAGDLVVSE NKFTAANCSG VTPATPRFDL TPSKGSVIRD ELHLNKDIDK  360
HDRAKLEQLK QAEQLRNNVQ MGLTNLPQPK NEYQIFMQPV PEDNEEAGQQ ALLGKKRSEV  420
LDMSKNGDKR CSFPPNSIEQ ADEMVRKEIL SLQQHDNADN PINEKVVSAF EEDELKEAVF  480
MIAEEARYVG EAHKSCLSCL SSIAEDKENH VAGLQNEFEK VQNELEKVKK KAERIENRAK  540
VRTHGYEKRA KDVLWPKIEE TFKQMDMAEK ELECFQALQK QEKLAATRQI NNLWEDVLKQ  600
KELEQTLQKR YGDLLVELEK VQNQFKGAAP IMIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	206	KRRELKAAGIYDESNRSQKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-150	MYB family protein