PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G10075
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 193aa    MW: 22303.4 Da    PI: 8.8508
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G10075genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.2e-183789456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 + ++t++q++ Le+ F +n+++  +++  LAk+lg++ rqV +W+qN+Ra++k
  Ro03_G10075 37 KKRLTQDQVKLLERSFSSNNKLEPDRKLLLAKQLGIPARQVAIWYQNKRARWK 89
                 5679************************************************9 PP
2HD-ZIP_I/II105.25e-3436127293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl+++qvklLE+sF++++kLep+rK  la++Lg+ +rqva+W+qn+RAR+kt+ lE  y+a++ ++++  +e++rLek+ve+Lr elk+
  Ro03_G10075  36 NKKRLTQDQVKLLERSFSSNNKLEPDRKLLLAKQLGIPARQVAIWYQNKRARWKTQSLELGYNAIQVKLETALAEKRRLEKDVERLRGELKK 127
                  79**************************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MPHTHHLFFI SQNLQAPETS MDFFQTPSKR HQFHHNKKRL TQDQVKLLER SFSSNNKLEP  60
DRKLLLAKQL GIPARQVAIW YQNKRARWKT QSLELGYNAI QVKLETALAE KRRLEKDVER  120
LRGELKKAHE LLLDLSNQTV QPNQPVICSM FSASCDQEGA ASSSLQHGDD RDHGVNHEVK  180
ELEELYACLI GIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.17e-37HD-ZIP family protein