PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10160

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-YB

Protein Properties

Length: 218aa MW: 23743.4 Da PI: 6.3037

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10160	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	173.3	2.5e-54	38	134	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdrf+Pianv+rim+++lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl+++re+eg++ Ro03_G10160 38 VREQDRFMPIANVIRIMRRILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRFREMEGDR 134 69*********************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MRLAEMNHTK NIAAGANNVN NNGTTTTTTA ADDNECTVRE QDRFMPIANV IRIMRRILPP 60 HAKISDDAKE TIQECVSEYI SFITGEANER CQREQRKTIT AEDVLWAMSK LGFDDYIEPL 120 TLYLHRFREM EGDRGSMRTD TLIKTTRAMA AAEYHAAAAA GSFGLGVAGF APFHHHAFFG 180 YLKDASASNG AGTSSSQPAN ANANAAVANG DQQASHSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-69	NF-YB family protein