PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10173

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

FAR1

Protein Properties

Length: 621aa MW: 72244 Da PI: 6.3165

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10173	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.8e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke ++w v ++++ HnHel Ro03_G10173 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPAKKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 159 59******************8888.***************************************99867789***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MNSIPSKNIW IRRQQCPCGD WKCYVIYEGD SEETSLAAQL VKNDSPTSEA MVSPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAK KKPTGEHHRD 120 RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLTEKREN 240 DTLELLEACK VTKEADEDFV YDFTVDENDK TFVRFMRGRC PQTIITDLDP GLRDAITSEL 300 PNTKHVISIW NILPKVSSWF SVSLGSRYAE FKSDLDALYR VESTEDFELQ WNQMISIFGL 360 STDKHIALLH SFRASWAQCY MRGCFVARMA TTDYSKSIEV FLKGVFSTQT CLRSFFEQVG 420 ISANFQNQAR REMQYMHTKT CIPIEEHARS ILTPFAFNAL QHELVLAMQY AVSEMPNGSC 480 LVRHFKEIDG ERLVIWIPED EQIHCSCKEF ESSGLLCRHS LRVFIVKNYF QLPDKYYLNR 540 WRRENSLDFY DPHITRNSDD EWFQDYQCLA ETLFTESSIT KERSEYVQRE VTTHLTRILN 600 EVRNMPESEG VAMDLTFSPT A

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MNSIPSKNIW IRRQQCPCGD WKCYVIYEGD SEETSLAAQL VKNDSPTSEA MVSPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAK KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLTEKREN  240
DTLELLEACK VTKEADEDFV YDFTVDENDK TFVRFMRGRC PQTIITDLDP GLRDAITSEL  300
PNTKHVISIW NILPKVSSWF SVSLGSRYAE FKSDLDALYR VESTEDFELQ WNQMISIFGL  360
STDKHIALLH SFRASWAQCY MRGCFVARMA TTDYSKSIEV FLKGVFSTQT CLRSFFEQVG  420
ISANFQNQAR REMQYMHTKT CIPIEEHARS ILTPFAFNAL QHELVLAMQY AVSEMPNGSC  480
LVRHFKEIDG ERLVIWIPED EQIHCSCKEF ESSGLLCRHS LRVFIVKNYF QLPDKYYLNR  540
WRRENSLDFY DPHITRNSDD EWFQDYQCLA ETLFTESSIT KERSEYVQRE VTTHLTRILN  600
EVRNMPESEG VAMDLTFSPT A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-128	FAR1 family protein