PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10512

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 248aa MW: 28268.5 Da PI: 9.5109

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10512	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.6	0.00025	53	93	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++Er+RR+++ +++ +Lr+l+ ka +i+ + YI++Lq Ro03_G10512 53 KNLKAERKRRAKLSDRLLKLRSLMNKA-----------TIVDDSITYIHKLQ 93 56689*****************98655...........77777777777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MLCDQYLNDM EFAGSALDEL CLSSDQEGSS RGGRMGRRRY NDEEDDSILY KSKNLKAERK 60 RRAKLSDRLL KLRSLMNKAT IVDDSITYIH KLQKNVNMLQ DQLFEMEALS SLEAPEPEPR 120 KEETDAAEEM KKFGIQAEVS VTQIEGSKLW VKAVLAKKRG GFTKLIEAMT DFGFELTDTS 180 VTTSNGAMLV SSCVIVSIEK KKTTNQGLLF SPFRKKKKKI FLFYVTVHRI PLRYACNRAN 240 QRIDVGHH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	219	KKKTTNQGLLFSPFRKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21330.1	2e-27	bHLH family protein