PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10525

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GeBP

Protein Properties

Length: 429aa MW: 46898.5 Da PI: 8.7773

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10525	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	115.1	4e-36	180	270	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 fqrlws+eDei++L+G+i++++k+g++p++d++af+ef+kks++++v+k ql +K+rr++kKf+++vkk k+ + +k+hd k+felskk+Wg Ro03_G10525 180 FQRLWSDEDEITILKGMIEYTTKNGADPYSDMNAFHEFIKKSLKVDVTKIQLQDKLRRMRKKFENNVKK----KKYNPTKPHDVKVFELSKKVWG 270 9******************************************************************....888899*************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MAPKRPSPLD EPPAASSSEE EEEASSGEEE EEASGSESES ESEAPEPPKT STLQSTPEKK 60 PQPKKQDSAA VNAKPQSSSS GDSETESESE SDGDTLAKRR ANAVSNVKPI ASKPMEETPP 120 PKATKPRSKP SGTPAATKAG TKRPGGDSES IKDSKKAKKK KGDDQEDEAA EEDSKKAMPF 180 QRLWSDEDEI TILKGMIEYT TKNGADPYSD MNAFHEFIKK SLKVDVTKIQ LQDKLRRMRK 240 KFENNVKKKK YNPTKPHDVK VFELSKKVWG GGEASTGKVT LASTGKVEQP KSNGKAKSNQ 300 KGNRKTLASL KAELLASPES PKEADKSEAS LKPCASQSVW SEVIGFDKGF RELGLSETIV 360 KQGLELIGGS KQAELKDKWN KLHVAELELF VKRTELMRDQ AKLIVEAFKS SDHYLVVARS 420 LDPVEKSNL

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MAPKRPSPLD EPPAASSSEE EEEASSGEEE EEASGSESES ESEAPEPPKT STLQSTPEKK  60
PQPKKQDSAA VNAKPQSSSS GDSETESESE SDGDTLAKRR ANAVSNVKPI ASKPMEETPP  120
PKATKPRSKP SGTPAATKAG TKRPGGDSES IKDSKKAKKK KGDDQEDEAA EEDSKKAMPF  180
QRLWSDEDEI TILKGMIEYT TKNGADPYSD MNAFHEFIKK SLKVDVTKIQ LQDKLRRMRK  240
KFENNVKKKK YNPTKPHDVK VFELSKKVWG GGEASTGKVT LASTGKVEQP KSNGKAKSNQ  300
KGNRKTLASL KAELLASPES PKEADKSEAS LKPCASQSVW SEVIGFDKGF RELGLSETIV  360
KQGLELIGGS KQAELKDKWN KLHVAELELF VKRTELMRDQ AKLIVEAFKS SDHYLVVARS  420
LDPVEKSNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	5e-30	GeBP family protein