PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G10529
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 244aa    MW: 26612.2 Da    PI: 5.8037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G10529genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.9e-1282128554
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +  rE+ RRdr+N++f eL ++l +    + +K +Ka+iL  Av+ +++L
  Ro03_G10529  82 KACREKMRRDRLNDKFLELSSILEPG---RPPKTDKAAILVDAVRMVNQL 128
                  678**********************8...89***************9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MGSPPQNPNW VFDYDLIESI SVPGGDLPPL DPPAFTWGSD SYAAPTGPSV DFDGSFGNSE  60
TMKEIGSNKR VRSGSCNMSG SKACREKMRR DRLNDKFLEL SSILEPGRPP KTDKAAILVD  120
AVRMVNQLRG EAQHLKESSE SLQEKIIELK AEKNELRDEK QRLKAEKENL EQQIKALGPQ  180
PGFLPHPAAI PAPFAAPGQV VGGKLMPFMG YPGVSGYPGV SMWQFMPQAA VDTSQDHVLR  240
PPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-84bHLH family protein