PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10611

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 456aa MW: 49385.5 Da PI: 6.571

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10611	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28	4.8e-09	259	300	12	53
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 NR +A rs +RK +i+eLe+kv++L++e ++L +l + Ro03_G10611 259 ANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 300 6*********************************99887655 PP

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence
MSTHTTTTQE EEPTTQMHQD PQPNSNPNPH PNSNPNPNPN FIINPIPRGI VSSNNANAGG 60 ASAPSSSAPC PSPAVNVTSE NRIAPFTTSA ATSSSSSSSS SRMLGSSISN NPFIREGGGA 120 SGAHRRAHSE VSFRLPEDLM DLAGPDPFNG GGSSTEELGS EEDLFSTYID LDKLQGGDDG 180 PNDNGSVGVG EKRPSRHRHS SSVDASSTST GVFGEVMEAK KAMPPDKLAE LWTLDPKRAK 240 RVFWSMSIFS RLIVYRILAN RQSAARSKER KARYIQELER KVQTLQTEAT TLSAQLTLFQ 300 RDTTGLSTEN TELKLRLQAM EQQAQLRDAL NEALKKEVER LKVATGEMMS HSESFNLGMH 360 QMPYNNNPSA YFPITQQQQQ QPGPAGHQNM QLPAFNHSQS SMPTHHLHQS NSHSLSDIMQ 420 NGPVGQLQGL DISNKIPSIV KSEGPSLSAS ESSTTF

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence

MSTHTTTTQE EEPTTQMHQD PQPNSNPNPH PNSNPNPNPN FIINPIPRGI VSSNNANAGG  60
ASAPSSSAPC PSPAVNVTSE NRIAPFTTSA ATSSSSSSSS SRMLGSSISN NPFIREGGGA  120
SGAHRRAHSE VSFRLPEDLM DLAGPDPFNG GGSSTEELGS EEDLFSTYID LDKLQGGDDG  180
PNDNGSVGVG EKRPSRHRHS SSVDASSTST GVFGEVMEAK KAMPPDKLAE LWTLDPKRAK  240
RVFWSMSIFS RLIVYRILAN RQSAARSKER KARYIQELER KVQTLQTEAT TLSAQLTLFQ  300
RDTTGLSTEN TELKLRLQAM EQQAQLRDAL NEALKKEVER LKVATGEMMS HSESFNLGMH  360
QMPYNNNPSA YFPITQQQQQ QPGPAGHQNM QLPAFNHSQS SMPTHHLHQS NSHSLSDIMQ  420
NGPVGQLQGL DISNKIPSIV KSEGPSLSAS ESSTTF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.1	2e-70	bZIP family protein