PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G10658

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 693aa MW: 76271 Da PI: 9.0168

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G10658	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106	2e-33	324	381	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg+nWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k Ro03_G10658 324 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 381 8**************************************.*************85 PP
2	WRKY	105.2	3.5e-33	498	556	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+ Ro03_G10658 498 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 556 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence
MKKMAQKFNG QTIPMSTASE KALQYKERRR GYLVQYVTLF FFSTISLIFI SIFFITPPLF 60 FSLMASSSGS LDTSANSHPS NFTFPTHPFM TTSFSDLLSS GAETTNPTTR NTGYGGLSDR 120 IAERTGSGVP KFKSLPPPQL PISPPSVSPS SYFAIPPGLS PAELLDSPVL LSSSNILPSP 180 TTGTFAAQAF NWRSNSGSGG TNNNQQSVKQ EHKNYSDFSF QTQTRPPPTS SSTIFQSSNS 240 TIQTAQEQAW NNYLGPPKQD EFSSGKSMVK PEYGSSVQSF SSEMGTNIQS INAQPNSNGG 300 FQSGQYNNNN NHLQSHQCLN RRSDDGFNWR KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV 360 ERSLDGQITE IVYKGNHNHP KPQNTRRSAS SAASALAIQA SNHTTNEIPD QSFGSHGNSQ 420 MDNSIGTPEN SSISMGDDEF DQSSQKSKSG GGDEYDEEEP NAKRWKKEGD NECISAPGSR 480 TVREPRVVVQ TTSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTNPGCP VRKHVERASH 540 DLRAVITTYE GKHNHDVPAA RGSGSANRPL PSNNTTTTTN NNNNNNHNVA TAMRPMTHHS 600 TNNSANNPPL HNLRLPTSEG QAPFTLEMLQ SPGSFGFAGF DNSMGSYMNQ TQLNDSNLFS 660 KTKEEPRDDA FFESLLLIAF CIFKICLVSL KQT

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence

MKKMAQKFNG QTIPMSTASE KALQYKERRR GYLVQYVTLF FFSTISLIFI SIFFITPPLF  60
FSLMASSSGS LDTSANSHPS NFTFPTHPFM TTSFSDLLSS GAETTNPTTR NTGYGGLSDR  120
IAERTGSGVP KFKSLPPPQL PISPPSVSPS SYFAIPPGLS PAELLDSPVL LSSSNILPSP  180
TTGTFAAQAF NWRSNSGSGG TNNNQQSVKQ EHKNYSDFSF QTQTRPPPTS SSTIFQSSNS  240
TIQTAQEQAW NNYLGPPKQD EFSSGKSMVK PEYGSSVQSF SSEMGTNIQS INAQPNSNGG  300
FQSGQYNNNN NHLQSHQCLN RRSDDGFNWR KYGQKQVKGS ENPRSYYKCT YPNCPTKKKV  360
ERSLDGQITE IVYKGNHNHP KPQNTRRSAS SAASALAIQA SNHTTNEIPD QSFGSHGNSQ  420
MDNSIGTPEN SSISMGDDEF DQSSQKSKSG GGDEYDEEEP NAKRWKKEGD NECISAPGSR  480
TVREPRVVVQ TTSDIDILDD GYRWRKYGQK VVKGNPNPRS YYKCTNPGCP VRKHVERASH  540
DLRAVITTYE GKHNHDVPAA RGSGSANRPL PSNNTTTTTN NNNNNNHNVA TAMRPMTHHS  600
TNNSANNPPL HNLRLPTSEG QAPFTLEMLQ SPGSFGFAGF DNSMGSYMNQ TQLNDSNLFS  660
KTKEEPRDDA FFESLLLIAF CIFKICLVSL KQT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-107	WRKY family protein