PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G12060

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 325aa MW: 36201.6 Da PI: 6.8322

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G12060	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	9.5e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l +++q+G+++W++I++ g+ R++k+c++rw +yl Ro03_G12060 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	45.1	2.3e-14	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ E++ +v+++ G++ W++Ia+ ++ gRt++++k++w++ Ro03_G12060 68 GQFSDVEEQTIVKLHSVVGNR-WSLIAAQLP-GRTDNDVKNHWNT 110 7899***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MGRIPCCEKD NVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY 60 LRPDLKHGQF SDVEEQTIVK LHSVVGNRWS LIAAQLPGRT DNDVKNHWNT KLKKKLSGMG 120 IDPVTHKPFS HLMAEIATTL APPNEANLAE AALGCFKDEM LHLLTKKRID FQFQHSNTTP 180 GNNTATYINS KQEEKDDTIE KIKISLSRAM QEPDIHSHKS WDPTGATSAN LTGNCSAFPL 240 LPMSGFQYAL STFGNEGGGS PWSQSMCTGS TCTAADQQGH LHDKLEEENG EESEGGKELR 300 NGSHIFNSDS ILWDLSSDDL MNPLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	1e-107	MYB family protein