PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G12076

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 624aa MW: 69170 Da PI: 6.4468

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G12076	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	112	133	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F++k +L H+r+H Ro03_G12076 112 VCVECGKIFPSKKSLYGHMRSH 133 6********************9 PP
2	zf-C2H2	12.1	0.00061	365	387	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F ++ L H+++H Ro03_G12076 365 YTCSLCNKTFQSHQALGGHMSSH 387 9********************99 PP
3	zf-C2H2	16.5	2.3e-05	432	454	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k+F++ L H+r+H Ro03_G12076 432 HQCRICNKTFPTGQALGGHMRSH 454 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
MDIEHQDEVT ESNNNGGGLL IKLKMAKAEP FIEQGNRKPE NPTPQFTKFC HICHKGFESG 60 KALGGHMRMH VQESKGLIKS SSKSPKPMVA KKNSTTEFSA TTTTTDSSSE PVCVECGKIF 120 PSKKSLYGHM RSHPDRPYRG IEPPQSAKNS STSTLSDALP QNNHKAAEDQ QIDSAATARI 180 WFGANPKPVP DLSKIVPSWS QTAKRGRKSS NLSENNSETD DCDDDELDLS EAVHDLMMLA 240 QANPKGAEEA TNSNFMTKNQ DQEAKDKRVI DYVGVAKNRK QKLEIEEEED LGGGFGLEKS 300 GNYMKLGLDL KEDSEEELSD SENSESIVLA NMMRRKKRRK MKLEDLEEVV VGQDHQHQSY 360 HHKVYTCSLC NKTFQSHQAL GGHMSSHNKL KNNNNIQYSM MDHHSGSEDT NNGNANLTNT 420 ATQVDHDQAE SHQCRICNKT FPTGQALGGH MRSHWTGPND QAQSSQTGRK GLDIDLNELP 480 PMEYEQGTDY SGAGYATSSY NSGQMGTLSF CVKFLHGKHD GPVKDLKIID HDDVKNLTIY 540 MGWGEGVGAK GTLGLHVAPP LLAIAEIESN RYCATCSYPS TLETSRLLPR SINTAQICLL 600 LFLSQITPRD EEKKERERED KLAL

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

MDIEHQDEVT ESNNNGGGLL IKLKMAKAEP FIEQGNRKPE NPTPQFTKFC HICHKGFESG  60
KALGGHMRMH VQESKGLIKS SSKSPKPMVA KKNSTTEFSA TTTTTDSSSE PVCVECGKIF  120
PSKKSLYGHM RSHPDRPYRG IEPPQSAKNS STSTLSDALP QNNHKAAEDQ QIDSAATARI  180
WFGANPKPVP DLSKIVPSWS QTAKRGRKSS NLSENNSETD DCDDDELDLS EAVHDLMMLA  240
QANPKGAEEA TNSNFMTKNQ DQEAKDKRVI DYVGVAKNRK QKLEIEEEED LGGGFGLEKS  300
GNYMKLGLDL KEDSEEELSD SENSESIVLA NMMRRKKRRK MKLEDLEEVV VGQDHQHQSY  360
HHKVYTCSLC NKTFQSHQAL GGHMSSHNKL KNNNNIQYSM MDHHSGSEDT NNGNANLTNT  420
ATQVDHDQAE SHQCRICNKT FPTGQALGGH MRSHWTGPND QAQSSQTGRK GLDIDLNELP  480
PMEYEQGTDY SGAGYATSSY NSGQMGTLSF CVKFLHGKHD GPVKDLKIID HDDVKNLTIY  540
MGWGEGVGAK GTLGLHVAPP LLAIAEIESN RYCATCSYPS TLETSRLLPR SINTAQICLL  600
LFLSQITPRD EEKKERERED KLAL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	340	MRRKKRRK
2	334	340	RRKKRRK
3	336	340	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	5e-17	C2H2 family protein