PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G12842
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 659aa    MW: 75881 Da    PI: 5.8637
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G12842genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.82.6e-1152866572374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++ L +cA+av+s d++ a++lL+++++++sp+g ++qRla+yf+++L+arl++  +  y+ l +++ts    +e l+a+++   +sP+ ++s++ aN
  Ro03_G12842 286 TTMLNQCAQAVASYDQRTANELLKQIRQHSSPYGHATQRLAHYFANGLEARLTGIRTPSYSPLVSRQTS---AAEILQAYQVVTIASPFKTMSQFFAN 380
                  5789**************************************************9999*****999999...9************************* PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  ++I++ +e+e+r+HiiDf+is+G+QWp+L+q L++Rp+gpp+l iT+++ p++g   +e++eetg+rLa ++++++vpfe+nv +a+++e+++ e+L+
  Ro03_G12842 381 RTIMKLAENETRLHIIDFGISYGFQWPCLIQHLSERPSGPPKLHITAIELPQPGfrPRERVEETGRRLAGYCARFNVPFEYNV-IAQKWETIHSEDLK 477
                  *****************************************************9****************************9.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++E ++Vn+ ++l +++de+v  +s+rd+vLkl+k+++P+++++   +  +n++ F++rf eal ++ a+fd++ea++pre++ r + Ere++gr+
  Ro03_G12842 478 IERNELVVVNCLHRLRHIHDETVMENSPRDAVLKLIKNINPDIFIHGIINGTYNTPFFATRFKEALLHFYAFFDMFEATIPREDQRRLMFEREIFGRD 575
                  ************************************************************************************************** PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i+nvvaceg er+er et++kW+ r  +aG+k++pl+++  k++k l + ++  + +rv+e+ +++++gWk+r ++++S+W+
  Ro03_G12842 576 IMNVVACEGMERFERPETYKKWQIRNVRAGLKQLPLDQELLKKVKNLSNLMGyHNDFRVDEDGQWMLQGWKGRIVTALSFWK 657
                  **************************************************999999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    
MDTLFDRFSG SMEGFNFVHG STTHSSNPNL ANGFKVNHES TNTLFHPSDS STSLSPASEE  60
ETLDISYFKY PTLKYISDIL LDEDLEDKNC MLQNCLALQA AEKSFYDVLD PRDPPLPNQP  120
PLSADQSFEN SDDDSTQMMY QSSLVESFSD TLLVLDSVSE IQSLGNFGED DKFLPNGNFD  180
ITDKGRYQTN GSKEKKNHQR EDDHYPEEGR SNKQSVVSAD DSEPQEMFDK VLLCQGEDHH  240
EWESCTPHCS MKNEGIEKLQ HNRQSKGTRR NRSKRQNNNE EGVDLTTMLN QCAQAVASYD  300
QRTANELLKQ IRQHSSPYGH ATQRLAHYFA NGLEARLTGI RTPSYSPLVS RQTSAAEILQ  360
AYQVVTIASP FKTMSQFFAN RTIMKLAENE TRLHIIDFGI SYGFQWPCLI QHLSERPSGP  420
PKLHITAIEL PQPGFRPRER VEETGRRLAG YCARFNVPFE YNVIAQKWET IHSEDLKIER  480
NELVVVNCLH RLRHIHDETV MENSPRDAVL KLIKNINPDI FIHGIINGTY NTPFFATRFK  540
EALLHFYAFF DMFEATIPRE DQRRLMFERE IFGRDIMNVV ACEGMERFER PETYKKWQIR  600
NVRAGLKQLP LDQELLKKVK NLSNLMGYHN DFRVDEDGQW MLQGWKGRIV TALSFWKPA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270275RNRSKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-178GRAS family protein