PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G12848

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRAS

Protein Properties

Length: 496aa MW: 54861.4 Da PI: 4.6365

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G12848	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	143.9	1.5e-44	354	496	1	146
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+ lL+ cA+avs +d a +lL+++++++sp gd+ qRla++f++AL+arl++++s++y al+++ s +++l++++++ v+P++k+s + a Ro03_G12848 354 LRALLILCAQAVSVDDRGPAIELLEEIRQHSSPFGDSSQRLAHCFANALEARLVGTGSQMYTALTSKLMS---AADRLKFFQAYIAVCPFMKMSMIFA 448 5789**********************************************************999999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146 N++Il+a+e++e++H iDf+i +G+QWpaL++ L+ R++gpp+lRiTg Ro03_G12848 449 NHMILKAAEKAETLHLIDFGILYGFQWPALIHCLSRRAGGPPKLRITG 496 *********************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 496 aa Download sequence
MDPRLSELPN FNSSFNDQTL LPDMLNEYPS SDPFEDLSFL DPNPNSSALS SSFSPERDDG 60 EFCDSVLKFI NQVFMEEDME SKPCMFHDPF ALQATEKSLY EVIGGGKYPT SQDHVQNVES 120 ADGGYFSGNF SDSSSIPSQS VESWPVSAHI QENRPSILQN PIPEGFVFKS TSRARFQLSS 180 NGNGMVGSIT GELMVPDMLT ESEALVQFNR GVEEASKFLP RGLLISAESN KSYAVADRKA 240 EDVVVTKEKD GSEHFRTGSR GKKNHQREDI DLEDGRSTKQ SAVYMDDEEG ELSDIFEKVL 300 LSGREKPLPF ECKDDQVCQN EANNGLQQDG QDVGINNGKA RGKNQGNKKE VIDLRALLIL 360 CAQAVSVDDR GPAIELLEEI RQHSSPFGDS SQRLAHCFAN ALEARLVGTG SQMYTALTSK 420 LMSAADRLKF FQAYIAVCPF MKMSMIFANH MILKAAEKAE TLHLIDFGIL YGFQWPALIH 480 CLSRRAGGPP KLRITG

Sequence ? help Back to Top

Protein Sequence Length: 496 aa Download sequence

MDPRLSELPN FNSSFNDQTL LPDMLNEYPS SDPFEDLSFL DPNPNSSALS SSFSPERDDG  60
EFCDSVLKFI NQVFMEEDME SKPCMFHDPF ALQATEKSLY EVIGGGKYPT SQDHVQNVES  120
ADGGYFSGNF SDSSSIPSQS VESWPVSAHI QENRPSILQN PIPEGFVFKS TSRARFQLSS  180
NGNGMVGSIT GELMVPDMLT ESEALVQFNR GVEEASKFLP RGLLISAESN KSYAVADRKA  240
EDVVVTKEKD GSEHFRTGSR GKKNHQREDI DLEDGRSTKQ SAVYMDDEEG ELSDIFEKVL  300
LSGREKPLPF ECKDDQVCQN EANNGLQQDG QDVGINNGKA RGKNQGNKKE VIDLRALLIL  360
CAQAVSVDDR GPAIELLEEI RQHSSPFGDS SQRLAHCFAN ALEARLVGTG SQMYTALTSK  420
LMSAADRLKF FQAYIAVCPF MKMSMIFANH MILKAAEKAE TLHLIDFGIL YGFQWPALIH  480
CLSRRAGGPP KLRITG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-121	GRAS family protein