PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G13433
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17593.4 Da    PI: 10.0765
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G13433genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.57.5e-23953145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 kr+ ++s rqvtfskRr+g++KKA+E+ +LC++evav++fs+ gk
  Ro03_G13433  9 KRVMDSSSRQVTFSKRRTGLFKKAHEIATLCGVEVAVVVFSPGGK 53
                 678899************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MGRRKIEMKR VMDSSSRQVT FSKRRTGLFK KAHEIATLCG VEVAVVVFSP GGKPFSFGHP  60
NVDSVADRFL TQEEAEEENP KKTDDRGSGK VVERLNQQLA DILKQLEAEK KRGEVLFAIL  120
YVLILTRTYI TRCMALGFVS ELFWPVAAHG FVFAKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.19e-40M-type_MADS family protein