PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G13729
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family TCP
Protein Properties Length: 122aa    MW: 13343.2 Da    PI: 10.5578
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G13729genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP75.71.3e-232293474
          TCP  4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74
                 k ++   +h kv+gR  R+R+  +caar+F+L   LG+++++ tieWLl+qa+p+i+++tgt+ ++ +   +
  Ro03_G13729 22 KASSRGGRHKKVEGRQCRIRIEESCAARIFQLSCDLGHKTNGRTIEWLLKQAEPSIIAATGTGVTPINTPsT 93
                 55666779******************************************************5444432221 PP
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    
MARETELSTI ASSSRNTVLH GKASSRGGRH KKVEGRQCRI RIEESCAARI FQLSCDLGHK  60
TNGRTIEWLL KQAEPSIIAA TGTGVTPINT PSTPLVAVNL QENVVSHEDK DLVQKKRTRI  120
VG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.17e-26TCP family protein