PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G14105
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YA
Protein Properties Length: 383aa    MW: 41851.8 Da    PI: 7.6895
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G14105genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.5e-32207263158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  Ro03_G14105 207 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKVRKPYLHESRHQHAMRRARGTGGRF 263
                  69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MELQRDSWTL SRNISCPVQL GLPGHLGIED YPKSETENRR RNRVPADHHT IPPTTVSSEP  60
WWRTVGFNPT SPTVTGINAS NSSLLECPKS RSESSDDQSV SDDGSNEDDD DATKESQMTS  120
PQSVENHGQK NQDVQHASST VPTMHDDCVA QPPQLELIGH SIACASNPYQ DPYYAGMIAA  180
YGQQPLGYPP FVGMPHARMP LPIEMAQEPV YVNAKQYQGI LRRRQARAKA ELEKKLIKVR  240
KPYLHESRHQ HAMRRARGTG GRFAKKTNGD TSKNTGQGKG SSSGPAHSSQ SASSSGSEPL  300
PSDSAETWNS STSQQEARRP QVHDAYAANN YVNGSGCYQT HGGLQASLYH SYSGKRGDEG  360
DCTGQQRGSI SSNQGSHRRL AIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.12e-76NF-YA family protein