PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G14122
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 324aa    MW: 35902.8 Da    PI: 4.7654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G14122genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.6e-152875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l ++    G g+W+ +ar  g+ R++k+c++rw +yl
      Ro03_G14122 28 KGLWSPEEDEKLMRYMLNNGQGCWSDVARNAGLERCGKSCRLRWINYL 75
                     678*******************************************97 PP
2Myb_DNA-binding48.91.5e-1581124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E++l+++ + +lG++ W+ Ia++++ gRt++++k++w++
      Ro03_G14122  81 RGAFSPQEEDLIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 124
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MRKPEPSSAT STGKNNKNNS MSNNKLRKGL WSPEEDEKLM RYMLNNGQGC WSDVARNAGL  60
ERCGKSCRLR WINYLRPDLK RGAFSPQEED LIIHFHSLLG NRWSQIAARL PGRTDNEIKN  120
FWNSTIKKRI KLMSSSSSSS IASPNASDSS SDQPNNKDFF TAGGGGGGGG GGGRGFMNII  180
PPSMMPIYAD SSLINHMFEP FPMIEQGGYY NNGTPCTTQV GSVGGENCGF GETTIGVFGV  240
EEEIFVPPLE SVSTTDQDQN LKTETIFYDH NNYYSNSNNI KGENMMGVGN YFEDDQDQGL  300
TMGEWDLEDL MKDVSSFPFL DYQS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.12e-72MYB family protein