PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G14536
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 174aa    MW: 19551.8 Da    PI: 4.3803
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G14536genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.9e-201361456
          AP2  4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 kGVr+++ +grW+AeIrdp++   rkr +lg+f taeeAa  +++a++kl+g+
  Ro03_G14536 13 KGVRRRP-WGRWAAEIRDPTQ---RKRLWLGTFNTAEEAAIIYDRAALKLRGP 61
                 9******.**********965...5**************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MAKFSEHVIS MSKGVRRRPW GRWAAEIRDP TQRKRLWLGT FNTAEEAAII YDRAALKLRG  60
PDAVTNFPNA VVTEKTAAAE VPTTHEEEED RSFGSATCDS PPNEEPALSP TSVLRYEDPT  120
PFDGFRYCDV HAFGFDIDVP LLSLPDMMVP ANNNFNHDEF GEFDVNDFLV DVIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-31ERF family protein