PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G15844
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YC
Protein Properties Length: 291aa    MW: 32844.8 Da    PI: 6.0176
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G15844genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.65e-55972011102
        NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 
                  ql++fw +q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi
  Ro03_G15844  97 QLQVFWGNQmqdIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEIFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDI 194
                  89*****9988889************************************************************************************ PP

        NF-YC  96 vprdelk 102
                  +prdelk
  Ro03_G15844 195 IPRDELK 201
                  ****875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MDHSDQTQQQ QQQQQQQQQQ QQHHQQQPVV GVVTGPGQMS YAPPSYQTGP MVASGTPAVA  60
IPSPTQPPPT FSNSPHQLAY QQAQHFHNQQ QQQQQQQLQV FWGNQMQDIE QTTDFKNHSL  120
PLARIKKIMK ADEDVRMISA EAPVIFAKAC EIFILELTLR SWIHTEENKR RTLQKNDIAA  180
AISRTDVFDF LVDIIPRDEL KEEGLGVTKA NIPVVGSAAD IPYYYVPPQH PVGTPGMIMG  240
KPVDQAAMYG AQQPRPPMAF LPWAQSQPQQ PLPQQQQQTQ QQQTDNYVTN D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.13e-78NF-YC family protein