PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G16158
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NF-YA
Protein Properties Length: 200aa    MW: 21928.2 Da    PI: 9.1806
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G16158genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.92.9e-32108164158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep++VNaKQy++Il+RRq+Rak+e+e+k   ksrkpylheSRh hAlrR+Rg+gGrF
  Ro03_G16158 108 EEPVFVNAKQYHGILRRRQSRAKAESENKA-LKSRKPYLHESRHLHALRRARGCGGRF 164
                  69***************************9.9*************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MYGSGNSSES DDQQKHSESQ IHSSSPAPGM SHPGIPGPIQ YVAPPQIGAG HAVAPGAYPY  60
PDPYYRSIFA PYDTQPYPPQ PYGGQPTVHL QLMGIQQAGV PLPTDAVEEP VFVNAKQYHG  120
ILRRRQSRAK AESENKALKS RKPYLHESRH LHALRRARGC GGRFLNAKKD ENEQSEGNNS  180
QAIINLNSDK SERSSSDRTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.27e-54NF-YA family protein