PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G16162
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family BES1
Protein Properties Length: 166aa    MW: 17594.8 Da    PI: 9.9103
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G16162genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221142.4e-35597394
       DUF822  3 sgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspessl 94
                 sg  +++ E+E++k RER+RRai++ki+ GLR++G+ykl  raD+neVl+  ++eAGw+ve+DGttyr        +  + ++s+ + + +++
  Ro03_G16162  5 SGSGRSESEKEKTKIRERQRRAITTKIFHGLRKHGGYKLSPRADINEVLRHFAKEAGWLVEPDGTTYRSNVLNCcPACGVSKASTATAIATPT 97
                 666678899***********************************************************6654443222333333333333332 PP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    
MAGTSGSGRS ESEKEKTKIR ERQRRAITTK IFHGLRKHGG YKLSPRADIN EVLRHFAKEA  60
GWLVEPDGTT YRSNVLNCCP ACGVSKASTA TAIATPTPSS TVVMGGGECS TTASPLRLPE  120
LNSSGSGSGS GAHFICPSAY TFKGELHHMQ EARASNHITP VASPRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.12e-17BES1 family protein