PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G16399

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ARF

Protein Properties

Length: 749aa MW: 82205.7 Da PI: 6.2952

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G16399	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.6	1e-22	168	269	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+F + +++ l Ro03_G16399 168 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGDAVLFL--RGENGDL 262 99**************************963.3445679**********************************************..3488888 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ Ro03_G16399 263 RLGIRRA 269 9999986 PP
2	Auxin_resp	26.9	2.1e-10	311	335	58	82
Auxin_resp 58 rlsGtvvgvsdldpvrWpnSkWrsL 82 r+sG+v+g+sdldp+rW+nSkWr+L Ro03_G16399 311 RCSGVVTGISDLDPYRWSNSKWRCL 335 679*********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 749 aa Download sequence
MEFDLNHAVV ADVVEKNACC NGDCDKGGCA YCLSSSTSSC SSNSSSSPVV SSIYLELWHA 60 CAGPLISLPK KGNAVVYFPQ GHSEQIASST APFSSMEIPP LDLQPQIFCK VVNVQLLANK 120 ENDEVYTHVS LLPQAELVGM NLEGKELEEL GVDEGDGGSP TKSTPHMFCK TLTASDTSTH 180 GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVEWRF RHIYRGQPRR HLLTTGWSIF 240 ISQKNLVSGD AVLFLRGENG DLRLGIRRAV RPRNGLPESI LGNQNSYSSV LTLVANAVST 300 KSMFHVFYSP RCSGVVTGIS DLDPYRWSNS KWRCLMVEKS MNGQILNVRW DEDIGTDHQE 360 RVSPWEIDPS VSLPPLSIQS SPRLKKLRTS LQAFPPNHSI PAGGCGFMDF EETVKSSKVL 420 QGQENMGFIS PHYGCDTINS PVDFEMQPSA HQNLASNVTQ KATIGEFMRA HHTSFTGFAE 480 SDRFPKVLQG QEICPLRSLT GKANFNLGDW ESNLGCTSFN IYQAPKPNSF SLSSESLLNM 540 YFPYGDIHKA GQGPMMCSNT SNLPRENIKV NPYSIQMGIA RNEVPRPNKP SEHKPQESTS 600 ALPTLVSNVK NPKEVNTDGT ASGCKLFGFS LSGENPTPSQ SSSKRSCTKV HKQGSLVGRA 660 IDLAKLNGYG DLLSELERLF SMEGLLRDPN KGWRILYTDS ENDVMEEVEK MTIGMISDDT 720 QSCLEQAPPM LEVSSSVGQP DSSPTVIRV

Sequence ? help Back to Top

Protein Sequence Length: 749 aa Download sequence

MEFDLNHAVV ADVVEKNACC NGDCDKGGCA YCLSSSTSSC SSNSSSSPVV SSIYLELWHA  60
CAGPLISLPK KGNAVVYFPQ GHSEQIASST APFSSMEIPP LDLQPQIFCK VVNVQLLANK  120
ENDEVYTHVS LLPQAELVGM NLEGKELEEL GVDEGDGGSP TKSTPHMFCK TLTASDTSTH  180
GGFSVPRRAA EDCFPPLDYK QQRPSQELVA KDLHGVEWRF RHIYRGQPRR HLLTTGWSIF  240
ISQKNLVSGD AVLFLRGENG DLRLGIRRAV RPRNGLPESI LGNQNSYSSV LTLVANAVST  300
KSMFHVFYSP RCSGVVTGIS DLDPYRWSNS KWRCLMVEKS MNGQILNVRW DEDIGTDHQE  360
RVSPWEIDPS VSLPPLSIQS SPRLKKLRTS LQAFPPNHSI PAGGCGFMDF EETVKSSKVL  420
QGQENMGFIS PHYGCDTINS PVDFEMQPSA HQNLASNVTQ KATIGEFMRA HHTSFTGFAE  480
SDRFPKVLQG QEICPLRSLT GKANFNLGDW ESNLGCTSFN IYQAPKPNSF SLSSESLLNM  540
YFPYGDIHKA GQGPMMCSNT SNLPRENIKV NPYSIQMGIA RNEVPRPNKP SEHKPQESTS  600
ALPTLVSNVK NPKEVNTDGT ASGCKLFGFS LSGENPTPSQ SSSKRSCTKV HKQGSLVGRA  660
IDLAKLNGYG DLLSELERLF SMEGLLRDPN KGWRILYTDS ENDVMEEVEK MTIGMISDDT  720
QSCLEQAPPM LEVSSSVGQP DSSPTVIRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60450.1	0.0	ARF family protein