PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G16936

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 679aa MW: 75135.4 Da PI: 10.3481

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G16936	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.6	3e-10	74	121	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + +K +Ka++L Av+ +++L Ro03_G16936 74 SKACREKLRRDRLNDKFLELGSILEPG---RPPKTDKAAVLIDAVRMVNQL 121 5678********************8...89*************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MVSPENTNWL FDYSLIDDTN FPVSSSAFNW PVQPIPGSSS VSVEIDGSLG DAEGLKESGS 60 KKRVRTESSS ATSSKACREK LRRDRLNDKF LELGSILEPG RPPKTDKAAV LIDAVRMVNQ 120 LRGEAQKLKD SNSSLQEKIK ELKAEKTELR DEKQRLKSEK EKLEQQLKAM TAQPSFLPPP 180 PAIPAAFAAQ GQAHGNKMVP FIGYPGVAMW QFMPPAAVDT SQDHVLRPPA QMASNLLKIH 240 TKTIRTPNPA TPFSLPKTLS FTSLPFPTHH QHSQISLPST FPNKSKIPTL SPLCSLSSPT 300 PPNSKEAAIQ QAKTCLTTTL EKPLNNLRLT NKLKKLKQPR FRIEIPVADD SPESLSQLAL 360 QVFGDLPIKR KGSPVNILVL WPDITFTKAA LKAFESRPSS PVQHFDISSI ANGNTRILSD 420 ADVAVFLAPE GSQLAVMKTV VDLLYPRPVV IFNPKWGFEE EAEFGELSSF VGSFEVIFSF 480 MGLEVKGLLS KRNGVIFKCV RDGVVSGEKW AVLVEEEQGE LKLVSTFKSR PSIAEVEYVL 540 YNLMAMNSPV TKSVKFFRDL VSNVTGKKFF RSKPNALELV ILSDSSRRRR NEFRTREVAT 600 TEAARTLSEA RTKWKKELST RAGTNSADGS WRRAAALVEC SLANLKNGGQ KEHLVSPSMV 660 STAVITNTNL RRNVKKRME

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MVSPENTNWL FDYSLIDDTN FPVSSSAFNW PVQPIPGSSS VSVEIDGSLG DAEGLKESGS  60
KKRVRTESSS ATSSKACREK LRRDRLNDKF LELGSILEPG RPPKTDKAAV LIDAVRMVNQ  120
LRGEAQKLKD SNSSLQEKIK ELKAEKTELR DEKQRLKSEK EKLEQQLKAM TAQPSFLPPP  180
PAIPAAFAAQ GQAHGNKMVP FIGYPGVAMW QFMPPAAVDT SQDHVLRPPA QMASNLLKIH  240
TKTIRTPNPA TPFSLPKTLS FTSLPFPTHH QHSQISLPST FPNKSKIPTL SPLCSLSSPT  300
PPNSKEAAIQ QAKTCLTTTL EKPLNNLRLT NKLKKLKQPR FRIEIPVADD SPESLSQLAL  360
QVFGDLPIKR KGSPVNILVL WPDITFTKAA LKAFESRPSS PVQHFDISSI ANGNTRILSD  420
ADVAVFLAPE GSQLAVMKTV VDLLYPRPVV IFNPKWGFEE EAEFGELSSF VGSFEVIFSF  480
MGLEVKGLLS KRNGVIFKCV RDGVVSGEKW AVLVEEEQGE LKLVSTFKSR PSIAEVEYVL  540
YNLMAMNSPV TKSVKFFRDL VSNVTGKKFF RSKPNALELV ILSDSSRRRR NEFRTREVAT  600
TEAARTLSEA RTKWKKELST RAGTNSADGS WRRAAALVEC SLANLKNGGQ KEHLVSPSMV  660
STAVITNTNL RRNVKKRME

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	587	615	RRRRNEFRTREVATTEAARTLSEARTKWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	1e-88	bHLH family protein