PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G17042

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

G2-like

Protein Properties

Length: 424aa MW: 46593.8 Da PI: 8.6208

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G17042	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.8	6.8e-30	152	205	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv++v++L G+++A+Pkti+++m+v+gLt+e+v+SHLQkYRl Ro03_G17042 152 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQMMNVEGLTRENVASHLQKYRL 205 59*****************.******************************8 PP
2	Myb_DNA-binding	48.6	1.9e-15	154	204	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r+ WT+++++++vd+v+ lG + +ktI+++m+ +g+t++++ s++qky+ Ro03_G17042 154 RLVWTPQLHKRFVDVVAHLGIKnaVPKTIMQMMNvEGLTRENVASHLQKYR 204 789*****************9*************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MGEEVRMSEY EGGGSGGDGD EERVLEWEAG LPTVDDLTPL SQPLIPVELA SAFSISPEPC 60 RTVVDVNRAS QKTVSTLRGS HSQGYSSNYK SLEGGGDEPM VAEVDETEPY GGAGSDSRKS 120 RKVDSPEEAD SALRIENSGG GGDDPSSRTV KRPRLVWTPQ LHKRFVDVVA HLGIKNAVPK 180 TIMQMMNVEG LTRENVASHL QKYRLYLKRM QGLSNEGPSS SDHLFASTPV PQSLHESGAS 240 GSGHGNGHMI PMPYPPGPMM PMPTYMRMPG GYHGFESHPS YNMMQQHKYD CSEKLERDVI 300 GRVVAPAATA ISAELLISTV AECPHNYSSI APVIIFINWL PRLSSPTNKK QPQKPHISRV 360 CCSKPLTASD YYQNSNHQRS RKCRNSKFRR VAPAKKVEKK KLRNKLMLRC LIPGDLPSLR 420 VSSE

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MGEEVRMSEY EGGGSGGDGD EERVLEWEAG LPTVDDLTPL SQPLIPVELA SAFSISPEPC  60
RTVVDVNRAS QKTVSTLRGS HSQGYSSNYK SLEGGGDEPM VAEVDETEPY GGAGSDSRKS  120
RKVDSPEEAD SALRIENSGG GGDDPSSRTV KRPRLVWTPQ LHKRFVDVVA HLGIKNAVPK  180
TIMQMMNVEG LTRENVASHL QKYRLYLKRM QGLSNEGPSS SDHLFASTPV PQSLHESGAS  240
GSGHGNGHMI PMPYPPGPMM PMPTYMRMPG GYHGFESHPS YNMMQQHKYD CSEKLERDVI  300
GRVVAPAATA ISAELLISTV AECPHNYSSI APVIIFINWL PRLSSPTNKK QPQKPHISRV  360
CCSKPLTASD YYQNSNHQRS RKCRNSKFRR VAPAKKVEKK KLRNKLMLRC LIPGDLPSLR  420
VSSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46640.3	4e-78	G2-like family protein