PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G17184

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 1023aa MW: 113484 Da PI: 6.7967

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G17184	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed+ l+d+v+++G g+W++ r ++R++k+c++rw ++l Ro03_G17184 36 KGPWTTAEDQVLIDCVRKYGEGNWNSLRRNSRLNRCGKSCRLRWANHL 83 79******************************************9986 PP
2	Myb_DNA-binding	50.7	4.2e-16	89	132	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++ Ro03_G17184 89 KGAFTPEEERLILQLHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 132 799*****************.*****.*********96 PP
3	Myb_DNA-binding	55.8	1e-17	524	571	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l ++v+++G g+W+++ r g++R++k+c++rw ++l Ro03_G17184 524 KGPWTAAEDQILMEYVRKHGEGNWNSVQRNSGLNRCGKSCRLRWANHL 571 79******************************************9986 PP
4	Myb_DNA-binding	50.8	3.9e-16	577	620	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a+ ++ gRt++++k++w++ Ro03_G17184 577 KGAFTPEEERLILELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 620 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1023 aa Download sequence
MAQNIDGVNG GAMLNIEGRP SESGGLMEGS NLALKKGPWT TAEDQVLIDC VRKYGEGNWN 60 SLRRNSRLNR CGKSCRLRWA NHLHPSLKKG AFTPEEERLI LQLHAKYGNK WARMASQLPG 120 RTDNEIKNYW NTRVKRRQRK GLPQYPDDIK QSHSQPTTPS IPIGLTQPAT TTIPPTVPSF 180 CFPFHSSSSQ THLPPISTNP SHQSPAFSSS HQPEFTLNHS LPLFDPATSS FSTSVPSFTF 240 HRPTPMLGSP LGYRQYRDNV GFSPPISPTP KRSSSILRTS SMPDVVSYQQ FAASTNSMPD 300 MSSFQFQPRS FNEYLVPFPG TSTQIDFGDS FFIKSELPSC KLSQTPEPLS SQVSQTQSLS 360 EIIIDGNINA TAVMATNEIH WTSNGFLEEL LQEAEALNNS LLDLSKQSNF ISSTEPVSHW 420 YSSDIGDLYN SQSSGVTEIS LKFDMQQRMA SIVASIDNDR VPHSWDNLPE TPVETPIIPE 480 RFKGLEYGES DDEGRASFIY IEIYSEGRPS ETSGAMEGTK ALKKGPWTAA EDQILMEYVR 540 KHGEGNWNSV QRNSGLNRCG KSCRLRWANH LRPNLRKGAF TPEEERLILE LHAKYGNKWA 600 RMASQLPGRT DNEIKNYWNT RVKRRQRQGL PLYPLDIKQP QPQHHSHSHS YPQPTSLTIP 660 TGLTQPAGTI AMPPTGPTFC FQFQTSSSSQ SHQPHPIAPT PPHHSPHHPK SGHNHSLPLF 720 DPATASSFSA SDPSFTFHRP TPIHGAPLRY KRYCDSFGFS PPDSPTPQRN SSILRISSMP 780 DIGSNQRFAA GNISMPDMAS FHFQPPWNFN GSLPPLPRST STQFDFGDSL MSPSTRSLYS 840 VNSELPSSQV SQTQSQSDQI TIDNKVDVAA ATPETHCNNN GFLEELLQEV EALASVANTR 900 KAAIGQLGSF EDKQVLDGYG RWLATSSTDT SLLEVKSIQD HGHMNSTPED LSKMFSFISS 960 TEQVSDWYST DSGEPSNGGQ SSGVTEASLE FDMQQHMASL FPAIVSTDHD RVPNNWDNLP 1020 GIC

Sequence ? help Back to Top

Protein Sequence Length: 1023 aa Download sequence

MAQNIDGVNG GAMLNIEGRP SESGGLMEGS NLALKKGPWT TAEDQVLIDC VRKYGEGNWN  60
SLRRNSRLNR CGKSCRLRWA NHLHPSLKKG AFTPEEERLI LQLHAKYGNK WARMASQLPG  120
RTDNEIKNYW NTRVKRRQRK GLPQYPDDIK QSHSQPTTPS IPIGLTQPAT TTIPPTVPSF  180
CFPFHSSSSQ THLPPISTNP SHQSPAFSSS HQPEFTLNHS LPLFDPATSS FSTSVPSFTF  240
HRPTPMLGSP LGYRQYRDNV GFSPPISPTP KRSSSILRTS SMPDVVSYQQ FAASTNSMPD  300
MSSFQFQPRS FNEYLVPFPG TSTQIDFGDS FFIKSELPSC KLSQTPEPLS SQVSQTQSLS  360
EIIIDGNINA TAVMATNEIH WTSNGFLEEL LQEAEALNNS LLDLSKQSNF ISSTEPVSHW  420
YSSDIGDLYN SQSSGVTEIS LKFDMQQRMA SIVASIDNDR VPHSWDNLPE TPVETPIIPE  480
RFKGLEYGES DDEGRASFIY IEIYSEGRPS ETSGAMEGTK ALKKGPWTAA EDQILMEYVR  540
KHGEGNWNSV QRNSGLNRCG KSCRLRWANH LRPNLRKGAF TPEEERLILE LHAKYGNKWA  600
RMASQLPGRT DNEIKNYWNT RVKRRQRQGL PLYPLDIKQP QPQHHSHSHS YPQPTSLTIP  660
TGLTQPAGTI AMPPTGPTFC FQFQTSSSSQ SHQPHPIAPT PPHHSPHHPK SGHNHSLPLF  720
DPATASSFSA SDPSFTFHRP TPIHGAPLRY KRYCDSFGFS PPDSPTPQRN SSILRISSMP  780
DIGSNQRFAA GNISMPDMAS FHFQPPWNFN GSLPPLPRST STQFDFGDSL MSPSTRSLYS  840
VNSELPSSQV SQTQSQSDQI TIDNKVDVAA ATPETHCNNN GFLEELLQEV EALASVANTR  900
KAAIGQLGSF EDKQVLDGYG RWLATSSTDT SLLEVKSIQD HGHMNSTPED LSKMFSFISS  960
TEQVSDWYST DSGEPSNGGQ SSGVTEASLE FDMQQHMASL FPAIVSTDHD RVPNNWDNLP  1020
GIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	3e-66	MYB family protein