PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G17485
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family B3
Protein Properties Length: 615aa    MW: 70277 Da    PI: 10.3089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G17485genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.11.9e-1915105199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffkvl     ++++ l++p+kf++++  +  +  + +l+ +sg+ W+v+l  +k+ ++ ++  +GW +Fvk++ Lk gDf+vF++dg+s+f  +vk++
  Ro03_G17485  15 FFKVL--LGDFSKH-LRIPRKFTKKYIRP--SLGKCSLRGPSGQCWNVEL--EKTENGlFFHNNGWHSFVKDHLLKIGDFLVFHYDGESKF--KVKIY 103
                  77888..7788888.***********544..33389**************..99999978888************************9999..99999 PP

                  -S CS
           B3  98 rk 99 
                  ++
  Ro03_G17485 104 DR 105
                  87 PP
2B339.78.9e-132082931699
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  + +pk+ a + g+   ++k + ++d++g+ W  kl        ++++ r  +++GW e ++an++ +gD+vvF++++  ++ l +++frk
  Ro03_G17485 208 VAVPKEIAVAEGLM--NKKAVEIQDPTGKPWPAKLVAikckqnNRNQIRLDMSTGWGECCRANKISVGDTVVFEFVK--KTVLQLHIFRK 293
                  56788888777666..44579999***********667777444444448889*********************876..55568888886 PP
3B369.25.7e-22319409199
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffkvl     ++++ l+lp kf++++  +     + +l+++sg++W+v+l  +k+ +  ++  +GW++Fvk+++L++gDf+vF+++g+s+f  +v+++
  Ro03_G17485 319 FFKVL--LGDFSNH-LRLPPKFTRNYIRP-SL-GKCVLRNPSGKRWDVEL--EKRENDlFIHNDGWQRFVKDHRLQVGDFLVFHYEGESKF--KVTIY 407
                  77888..7888888.********999544.33.389**************..99998878888************************9999..88888 PP

                  -S CS
           B3  98 rk 99 
                  ++
  Ro03_G17485 408 DR 409
                  86 PP
4B340.54.8e-135065931499
                  T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   r+ +pk+ a + g+   ++k + +ed++g  W  kl +      +k+ +r  +++GW e +kan++  gD+vvF+l+++s   +++++frk
  Ro03_G17485 506 YRVLIPKELAVAEGLM--SKKAVDIEDPTGTMWPAKLVIirhrqnNKTCDRLDMSTGWGECCKANKISLGDTVVFELVKQSV--MRIHIFRK 593
                  5789*****9999877..4568***************76788887777888*************************987544..59999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    
MGRKPNQRSP KKQSFFKVLL GDFSKHLRIP RKFTKKYIRP SLGKCSLRGP SGQCWNVELE  60
KTENGLFFHN NGWHSFVKDH LLKIGDFLVF HYDGESKFKV KIYDRTCCEK DVEVAKRRSG  120
CPAPPANEGN QLAGVKDKEV IDLETENYKK NTEKKTRTAG RRRRNNLMPG EGLRIEGVNE  180
TSTGSILFKS ENSCFKLTLK RSYQQYVVAV PKEIAVAEGL MNKKAVEIQD PTGKPWPAKL  240
VAIKCKQNNR NQIRLDMSTG WGECCRANKI SVGDTVVFEF VKKTVLQLHI FRKGLGREVE  300
QKAEMGRNPS KLSPKKQSFF KVLLGDFSNH LRLPPKFTRN YIRPSLGKCV LRNPSGKRWD  360
VELEKRENDL FIHNDGWQRF VKDHRLQVGD FLVFHYEGES KFKVTIYDRT CCEKDVEVTK  420
KRSCGPTNSW ATEGNQLALV KDEIVDLETS NYNKAAENVD KRRRNNVMYG KRPRVEDGEE  480
TSTGSIMFKS ANSCFKLNLK ARCSLYRVLI PKELAVAEGL MSKKAVDIED PTGTMWPAKL  540
VIIRHRQNNK TCDRLDMSTG WGECCKANKI SLGDTVVFEL VKQSVMRIHI FRKCPGRRGG  600
NNSPSVVLDA PNIRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-23B3 family protein