PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G17983

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 503aa MW: 56039.8 Da PI: 8.1117

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G17983	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	4e-31	131	188	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ +++++ei+Y+g+H+h+k Ro03_G17983 131 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-EGHITEIIYKGTHDHPK 188 8**************************************.*************85 PP
2	WRKY	106.5	1.4e-33	306	364	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Ro03_G17983 306 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 364 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MRFFACTYHH WSIKRILAVL QAEPSPTTGS FLNPKMVYGT ASSTYSATMV CSDERNSGSF 60 EFKPHSRSNM VTTDYNHHSN DHAVQVQGQG QGASAPAEGD ADDVSQRGHP NSGVQMSQFD 120 HKGSGPSVSS DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HEGHITEIIY 180 KGTHDHPKPQ PSRRYNTGAM MTVPEERSDK ASSLTGRDDK SSSIYGQMSS TNEPNSTPEL 240 SPVRGNDGNV EGTVSLSTRI LDEVDDDDPF SKRRRMDVGG IDVTPVVKPI REPRVVVQTL 300 SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR KHVERASHDP KAVITTYEGK 360 HNHDVPTART SSHDTSGPTT VNVPSRIRTE ENDTISLDLG VGMSSAAENR SNNHLRLHSE 420 LAERQTHPSS NFKALQTTPA PSYYGVLNSG MSQYGSRENP SESRSIEIPP LNHSSYPYPQ 480 NMERVLTGYL NSQCKDNMVQ RKI

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MRFFACTYHH WSIKRILAVL QAEPSPTTGS FLNPKMVYGT ASSTYSATMV CSDERNSGSF  60
EFKPHSRSNM VTTDYNHHSN DHAVQVQGQG QGASAPAEGD ADDVSQRGHP NSGVQMSQFD  120
HKGSGPSVSS DDGYNWRKYG QKHVKGSEFP RSYYKCTHPN CEVKKLFERS HEGHITEIIY  180
KGTHDHPKPQ PSRRYNTGAM MTVPEERSDK ASSLTGRDDK SSSIYGQMSS TNEPNSTPEL  240
SPVRGNDGNV EGTVSLSTRI LDEVDDDDPF SKRRRMDVGG IDVTPVVKPI REPRVVVQTL  300
SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTNAGCPVR KHVERASHDP KAVITTYEGK  360
HNHDVPTART SSHDTSGPTT VNVPSRIRTE ENDTISLDLG VGMSSAAENR SNNHLRLHSE  420
LAERQTHPSS NFKALQTTPA PSYYGVLNSG MSQYGSRENP SESRSIEIPP LNHSSYPYPQ  480
NMERVLTGYL NSQCKDNMVQ RKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.1	1e-171	WRKY family protein