PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G18133
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family G2-like
Protein Properties Length: 253aa    MW: 28305.8 Da    PI: 9.3461
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G18133genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.31.8e-2879134255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmk..vkgLtlehvkSHLQkYRl 55 
                  prlrWtp+LH++F++av++LGG++ AtPk+il++m+   kg+t++h+kSHLQ+YR+
  Ro03_G18133  79 PRLRWTPDLHRCFMHAVDRLGGEDGATPKRILQIMNanYKGITITHIKSHLQMYRS 134
                  8**********************************73368***************7 PP
2Myb_DNA-binding44.14.8e-1480133148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg...kgRtlkqcksrwqkyl 48 
                      r+rWT++++  + +av +lGg+   t+k+I + m+   kg t  ++ks++q+y+
      Ro03_G18133  80 RLRWTPDLHRCFMHAVDRLGGEdgaTPKRILQIMNanyKGITITHIKSHLQMYR 133
                      89**************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MAMKRVELGE GSFLSSLENG AQLQCTTSHF PSYDAHDRRI EPQQTGVHRA NLPAERMIMP  60
RPTGLLTTTS RPYVRSRVPR LRWTPDLHRC FMHAVDRLGG EDGATPKRIL QIMNANYKGI  120
TITHIKSHLQ MYRSMKHEER IEEAAARAKV NEKGKASCSN DSYLPESINR SADRHWKDEK  180
KPRAYLIFTD LFRNISKDDQ GNIEGNIKGG GAIDATSSLS LNSSSNAYNS QGFKLSEAGT  240
SDVNDVSIEL TLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.12e-27G2-like family protein