PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G18867
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 212aa    MW: 23217.6 Da    PI: 8.0359
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G18867genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.6e-193180255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +g+++AeIrdp++   + r++lg+f +ae+Aa+a++aa++ l+g
  Ro03_G18867 31 KYRGVRKRP-WGKYAAEIRDPYK---KSRVWLGTFESAEDAARAYDAAARVLRG 80
                 8********.**********765...6***********************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MRRGRGAAVA AARATGPVAE PNGSIPIKEV KYRGVRKRPW GKYAAEIRDP YKKSRVWLGT  60
FESAEDAARA YDAAARVLRG PKAKTNFPTY SNHFCYNNPT DANFDNKLFG SGYGFLDDNP  120
VDPNRPASSS LSSTVESFSG PRQATQQSTT IAAESSRRKQ PRTPPMDPED CHSDCDSSSS  180
VVEDDGDFVA SSFRNPLAFD LNFPPLDEAM QI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.18e-30ERF family protein