PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G20675
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 254aa    MW: 28824 Da    PI: 8.4782
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G20675genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.4e-0550701030
                 HHHHHHHHHHHHHHHCTSCCC CS
          HLH 10 rrRRdriNsafeeLrellPka 30
                 +rRR+++ + f++Lre +P++
  Ro03_G20675 50 KRRRSNLEEYFARLRENVPPP 70
                 9******************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
NAKPLSDQCQ NPVRQAKRSF WEALGQDHKP ERPAKRFLQP AKKHRDKPTK RRRSNLEEYF  60
ARLRENVPPP LLMPPPVPLR ELIEKFPLSR PFGFDYVVEE VAAVVQFRYG SEAEQPPQIP  120
IEVVVHDDSP KNTEGSKFMS NIIKRLYSGV KLNCDEARNT KFRKTGDYEC PMCLKNDGHS  180
PVSCPYSFCV PKVDGKPVPV GPGCDIVCRA CGGQNCFDDH GWDSDDCPNK LSGMEAYEAF  240
KLNTIPIGPP VRRW