PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G21167
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family SBP
Protein Properties Length: 197aa    MW: 21996 Da    PI: 8.8296
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G21167genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.21.8e-4175150277
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                  Cq+e+C adl +ak yhrrhkvCe+hska+vv+vsg +qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk +
  Ro03_G21167  75 CQAERCGADLGDAKIYHRRHKVCEFHSKAAVVMVSGARQRFCQQCSRFHELAEFDEAKRSCRRRLAGHNERRRKIS 150
                  *************************************************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MERQTWNEKM HNKNADEVED DHDSDEDETS GHGSGLISIR FEENEKQKVK EAGSTGKKSG  60
SGSGSGGRAS SPPSCQAERC GADLGDAKIY HRRHKVCEFH SKAAVVMVSG ARQRFCQQCS  120
RFHELAEFDE AKRSCRRRLA GHNERRRKIS GEPYGEGSSR RGIGHQYRSE STQTTTRYHM  180
TAPAPGNSAN SNHFQIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.13e-49SBP family protein