PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G22592

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 474aa MW: 52293 Da PI: 4.7243

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G22592	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	34.2	4.5e-11	217	309	1	89
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 f+k lt sd+ s g+lv+pkk+ae++ ++ ++++ +t++d++g+ W+++++ +++ ++yvl+ G ++ + ++gD v F+ ++ se Ro03_G22592 217 FEKSLTASDAYHStGCLVIPKKYAEDYfpKIHEAQGYPITIQDTTGKDWKLEFRClakSNSEEKYVLE-GLTDYKVLMQWQAGDKVAFY--QTnSE 309 8999999999877789***********999999**************887755666669999.*****************9..33133 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MAANACFFCN AESDQFVNGW KLKDGSLAQL CKKCGFAYVN GTFCETFHVE AEGWRDCAIC 60 GKPLHCGCIM SCHKYAPLDL GGVGCAKCLL EVDQSIASGQ MTRMLKELVA KDKTVSSDLT 120 EKIVVSLSPG SLQAPAPQFG EASNRDASKG DTACETKVGS ETPQVDASIG SHLHPENLPK 180 TISAEQLPKI SGKYPLILCH SESLTNLSLN SDLIPLFEKS LTASDAYHST GCLVIPKKYA 240 EDYFPKIHEA QGYPITIQDT TGKDWKLEFR CLAKSNSEEK YVLEGLTDYK VLMQWQAGDK 300 VAFYQTNSEG LVIETKKPFT VPANRQENRL VSPTPIETSL KTDQEQSPRD IETGPTPVEA 360 SLKTDQEQSP RDMETSPTPI ETSRKSDQEQ SPRDIETGPM PVETSLKTDQ EQTPSDMETS 420 PTPIETCQKT NQEQSPRNME TGPTPVETSL NTVQLYFDSK YLLKKEYCSI LLMF

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MAANACFFCN AESDQFVNGW KLKDGSLAQL CKKCGFAYVN GTFCETFHVE AEGWRDCAIC  60
GKPLHCGCIM SCHKYAPLDL GGVGCAKCLL EVDQSIASGQ MTRMLKELVA KDKTVSSDLT  120
EKIVVSLSPG SLQAPAPQFG EASNRDASKG DTACETKVGS ETPQVDASIG SHLHPENLPK  180
TISAEQLPKI SGKYPLILCH SESLTNLSLN SDLIPLFEKS LTASDAYHST GCLVIPKKYA  240
EDYFPKIHEA QGYPITIQDT TGKDWKLEFR CLAKSNSEEK YVLEGLTDYK VLMQWQAGDK  300
VAFYQTNSEG LVIETKKPFT VPANRQENRL VSPTPIETSL KTDQEQSPRD IETGPTPVEA  360
SLKTDQEQSP RDMETSPTPI ETSRKSDQEQ SPRDIETGPM PVETSLKTDQ EQTPSDMETS  420
PTPIETCQKT NQEQSPRNME TGPTPVETSL NTVQLYFDSK YLLKKEYCSI LLMF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	8e-44	B3 family protein