PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G24401
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family YABBY
Protein Properties Length: 235aa    MW: 25607.5 Da    PI: 9.2013
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G24401genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY203.29.9e-6342072170
        YABBY   2 dvfssseqvCyvqCnfCntilavsvPs.tslf......kvvtvrCGhCtsllsvnlakas...qllaaeshldeslkee................... 70 
                  +++ sse+vCyv+Cn CntilavsvP  +sl+      +vvtvrCGhC++llsvn+  as   + l++ +   ++++ +                   
  Ro03_G24401   4 ELMASSERVCYVHCNLCNTILAVSVPAfNSLLsatataTVVTVRCGHCANLLSVNIGAASlqyYSLPSPNPSPTTGTAHphaqhyhshpnlhplqkhh 101
                  67899*********************54444322222289****************999866655666655444444445577777788888855444 PP

        YABBY  71 .lleelkveeenlksnvekeesastsvssekl............senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsa 155
                   l  e+ ++++++ s  +      +s+ss+              ++ ++ + pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+
  Ro03_G24401 102 qLSSEDSSSNKDYGSSSS------SSTSSKFTatasafnqasttTTTTTVDQPRISP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFST 192
                  322233333333222222......222222113344556665444555667777777.9*************************************** PP

        YABBY 156 aaknWahfPkihfgl 170
                  aaknWahfP+ihfgl
  Ro03_G24401 193 AAKNWAHFPHIHFGL 207
                  *************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MSMELMASSE RVCYVHCNLC NTILAVSVPA FNSLLSATAT ATVVTVRCGH CANLLSVNIG  60
AASLQYYSLP SPNPSPTTGT AHPHAQHYHS HPNLHPLQKH HQLSSEDSSS NKDYGSSSSS  120
STSSKFTATA SAFNQASTTT TTTTVDQPRI SPIRPPEKRQ RVPSAYNRFI KEEIQRIKAS  180
NPDISHREAF STAAKNWAHF PHIHFGLKLE SNKQAKLDHQ AFAGEGTQKS TNGFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.18e-60YABBY family protein