PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G25495

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

NF-YB

Protein Properties

Length: 222aa MW: 24381.1 Da PI: 5.7268

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G25495	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	166.1	4.7e-52	44	138	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 reqd+++Pianv+rim+++lP +akis+daketvqecvse+isf+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl+v+l+kyre eg Ro03_G25495 44 REQDQYMPIANVIRIMRRILPPHAKISDDAKETVQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDNYVEPLSVFLSKYRESEGS 138 89*****************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence
MDRVSGLDRF RSNRNEKSTT ALDPAQTNNN PEAASPRVPP CMIREQDQYM PIANVIRIMR 60 RILPPHAKIS DDAKETVQEC VSEYISFITG EANERCQREQ RKTVTAEDVL WAMGKLGFDN 120 YVEPLSVFLS KYRESEGSER NSLFVKRERE YAVPPSVVPG HYGPAAYDLA HHPGMYEAAA 180 MSGYYRDGGA GGSTSGAAGS SSSSQGQSGA VGGEFDPFAQ FK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	1e-61	NF-YB family protein