PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G26179
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 260aa    MW: 29057.9 Da    PI: 7.1664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G26179genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.4e-1488133454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+ve +k+L
  Ro03_G26179  88 NHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVERVKEL 133
                  8*************************8.....7*************99998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MQPENQDFYR FLAQNGLIHG HPYGSFPAGV ANCEFSSSAL AMPMHSFCSS SSYYPLNNLE  60
LSAVLSTTSN DTTTTTTPQD RALAALNNHK EAEKRRRERI NSHLDKLRSL LPCNSKTDKA  120
SLLAKVVERV KELKQQMSEI TELDTFPSET DEITVLSSGE EDYSSNGRII FKASLCCEDR  180
SELLPDLIEI LKSLHLKTLK AEIATLGGRI RSVLIVAADK DHTIESVPFL QNAFKSLLER  240
SNSSEKSKRR RRVLDPTLLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253KRRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-73bHLH family protein