PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G27030
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 221aa    MW: 24628.1 Da    PI: 6.7193
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G27030genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000142749123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ Fs+   L  H++ H
  Ro03_G27030 27 YECTFCKRGFSNAQALGGHMNIH 49
                 99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MESGDQQSPE NSGDQQGTNQ AAAAKSYECT FCKRGFSNAQ ALGGHMNIHR KDKAKLKQVS  60
SSSNIVETKQ QQRVPSEIPK LPPSYSQILP KNNPNIKSLE AIHMPHGDHI ERSATTIRGS  120
SWPNWFLHDK EGDNQLSHVG QVQQLPLFSQ APSDQDHQNQ GRPQQQQQED QGDQSEKGSD  180
LDLELRLGPE PQDSSSTLAK ATTRKLCNLR FGRISFLDFE N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.16e-18C2H2 family protein