PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G27169

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SRS

Protein Properties

Length: 408aa MW: 42805.3 Da PI: 7.8203

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G27169	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	210.3	4.9e-65	160	322	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 + +CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + +a ++ +++++++++k+++ +s++++ +++ ++s+++++++ + Ro03_G27169 160 SALTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMSEAVAAAGSSASTSSNAKKPKLVTSQTTTPSHTNSTSNTTPPRSYD 257 5679********************************************99999999999999999999988888888899999**999 PP DUF702 102 tss............lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 t+s +P +v+++avf+cvrv++vd+ +e+e+aYq++v+i GhvfkG+LydqG+e Ro03_G27169 258 TTSkhqhqdggfrdpMPGQVRAPAVFKCVRVTAVDEgAEDEYAYQAVVKIRGHVFKGFLYDQGIE 322 99999***************************88999********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MWSSSSGPSR PINYSFPPEM GMLGLRDVFL VAPAAAYHHH HHQDHPNLLS SDHNSVNASN 60 PATALGVGVI PLLTTTPCLG PPNTNMHHDN DDDDHDMMSG RNRNSAGGGG GGIHLWQQPT 120 QQQHQRFLKK NHILHGGGAH LMVQGCGGDI GSPAGAASSS ALTCQDCGNQ AKKDCSHRRC 180 RTCCKSRGFD CATHVKSTWV PAARRRERQL MSEAVAAAGS SASTSSNAKK PKLVTSQTTT 240 PSHTNSTSNT TPPRSYDTTS KHQHQDGGFR DPMPGQVRAP AVFKCVRVTA VDEGAEDEYA 300 YQAVVKIRGH VFKGFLYDQG IEGQGRDHSF PNMSDLHLGG GSGGGGGGAT STTTAGRNNG 360 GAPILDPSDV YAAAAAASSS GGLLLGGSNF EAGLELGSHL TLERYVVC

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MWSSSSGPSR PINYSFPPEM GMLGLRDVFL VAPAAAYHHH HHQDHPNLLS SDHNSVNASN  60
PATALGVGVI PLLTTTPCLG PPNTNMHHDN DDDDHDMMSG RNRNSAGGGG GGIHLWQQPT  120
QQQHQRFLKK NHILHGGGAH LMVQGCGGDI GSPAGAASSS ALTCQDCGNQ AKKDCSHRRC  180
RTCCKSRGFD CATHVKSTWV PAARRRERQL MSEAVAAAGS SASTSSNAKK PKLVTSQTTT  240
PSHTNSTSNT TPPRSYDTTS KHQHQDGGFR DPMPGQVRAP AVFKCVRVTA VDEGAEDEYA  300
YQAVVKIRGH VFKGFLYDQG IEGQGRDHSF PNMSDLHLGG GSGGGGGGAT STTTAGRNNG  360
GAPILDPSDV YAAAAAASSS GGLLLGGSNF EAGLELGSHL TLERYVVC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	2e-59	SRS family protein