PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G27408

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 24644.4 Da PI: 8.8018

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G27408	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.9	1.5e-19	10	46	15	51
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kR +++lKKA+ELS+LCdaevavi fs +gkl+eyss Ro03_G27408 10 KRHATLLKKAKELSILCDAEVAVIAFSGDGKLHEYSS 46 9**********************************96 PP
2	K-box	31.6	6.9e-12	84	166	9	91
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +++++++s+++ ++ Lk + L+ +R+++G+ L++Ls +eL Leq+ + +l ++ +kK+ell+ +++++ k +++l+++ Ro03_G27408 84 AKQEDQKSCDKIVDALKGQEAALRLHKRRRMGKALDELSREELCALEQEQNWALLSVMKKKEELLVGMLQRSEKENENLKRNF 166 5667778888899********************************************************99999999988764 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MPEIETLGRK RHATLLKKAK ELSILCDAEV AVIAFSGDGK LHEYSSTSVE HTLSRYKKKK 60 VGLVLPSKVE SDQPEERRRE MAAAKQEDQK SCDKIVDALK GQEAALRLHK RRRMGKALDE 120 LSREELCALE QEQNWALLSV MKKKEELLVG MLQRSEKENE NLKRNFEETM REKPYFLQFP 180 GVLTVFGTSS KAISLSNGPI QDEEKNLMEK EDRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	4e-29	MIKC_MADS family protein